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I believe those two are distinct and unrelated names; the consonants romanized as "h" correspond to two different Hebrew letters (compare: יהונתן Yəh

John is derived from Jonathan, which is the Hebrew name יְהוֹנָתָן / יוֹנָתָן Yonatan / Y'honatan. Jonathan is a longer form of the Nathan, incidentally (etymologically). I'm sure there is at least...