Since nobody has given any examples yet:

1) I would look at how the 5th, 6th, 7th and 8th amendments apply to Guantanamo Bay and its' inmates and to the activities of the CIA abroad. I assume all that must somehow be excempted from this Bill of Rights. (but if you are going to allow exceptions, then what's the point of having the Bill in the first place?)

2) This (below) is becoming a common site on the internet these days - seems to me these seizures could be unconstitutional in respect to the 1st, 4th and 9th above, as it's impossible to prove that the site owner has committed any crime. From TVShack